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RiceGE: Gene Expression Atlas Data Sources ( Jun. 22, 2010 ) |
| 1. GSE7951: Genome-wide gene expression profiling of rice stigma [Oryza sativa] | |
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GSM195218: stigma 1, biological rep1
GSM195219: stigma 2, biological rep 2 GSM195220: stigma 3, biological rep 2 GSM195221: Ovary 1, biological rep 1 GSM195222: Ovary 2, biological rep 2 GSM195223: Ovary 3, biological rep 3 GSM195224: Suspension cell * GSM195225: Shoot * GSM195226: Root * GSM195227: Anther * GSM195228: Embryo * GSM195229: Endosperm * GSM195230: 5d-seed * * Exculded (no reps). | |
| 2. GSE6893: Expression data for reproductive development in rice [Oryza sativa] | |
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GSM159177: Root, 7-day-old Seedling, biological rep 1
GSM159178: Root, 7-day-old Seedling, biological rep 2 GSM159179: Root, 7-day-old Seedling, biological rep 3 GSM159180: Mature leaf, biological rep 1 GSM159181: Mature leaf, biological rep 2 GSM159182: Mature leaf, biological rep 3 GSM159183: Y Leaf, biological rep 1 GSM159184: Y Leaf, biological rep 2 GSM159185: Y Leaf, biological rep 3 GSM159186: SAM, biological rep 1 GSM159187: SAM, biological rep 2 GSM159188: SAM, biological rep 3 GSM159189: Young inflorescence (P1, upto 3 cm), biological rep 1 GSM159190: Young inflorescence (P1, upto 3 cm), biological rep 2 GSM159191: Young inflorescence (P1, upto 3 cm), biological rep 3 GSM159192: Inflorescence (P2, 3 - 5 cm), biological rep 1 GSM159193: Inflorescence (P2, 3 - 5 cm), biological rep 2 GSM159194: Inflorescence (P2, 3 - 5 cm), biological rep 3 GSM159195: Inflorescence (P3, 5 - 10 cm), biological rep 1 GSM159196: Inflorescence (P3, 5 - 10 cm), biological rep 2 GSM159197: Inflorescence (P3, 5 - 10 cm), biological rep 3 GSM159198: Inflorescence (P4, 10 - 15 cm), biological rep 1 GSM159199: Inflorescence (P4, 10 - 15 cm), biological rep 2 GSM159200: Inflorescence (P4, 10 - 15 cm), biological rep 3 GSM159201: Inflorescence (P5, 15 - 22 cm), biological rep 1 GSM159202: Inflorescence (P5, 15 - 22 cm), biological rep 2 GSM159203: Inflorescence (P5, 15 - 22 cm), biological rep 3 GSM159204: Inflorescence (P6, 22 - 30 cm), biological rep 1 GSM159205: Inflorescence (P6, 22 - 30 cm), biological rep 2 GSM159206: Inflorescence (P6, 22 - 30 cm), biological rep 3 GSM159207: Seed (S1, 0 - 2 dap), biological rep 1 GSM159208: Seed (S1, 0 - 2 dap), biological rep 2 GSM159209: Seed (S1, 0 - 2 dap), biological rep 3 GSM159210: Seed (S2, 3 - 4 dap), biological rep 1 GSM159211: Seed (S2, 3 - 4 dap), biological rep 2 GSM159212: Seed (S2, 3 - 4 dap), biological rep 3 GSM159213: Seed (S3, 5 - 10 dap), biological rep 1 GSM159214: Seed (S3, 5 - 10 dap), biological rep 2 GSM159215: Seed (S3, 5 - 10 dap), biological rep 3 GSM159216: Seed (S4, 11 - 20 dap), biological rep 1 GSM159217: Seed (S4, 11 - 20 dap), biological rep 2 GSM159218: Seed (S4, 11 - 20 dap), biological rep 3 GSM159219: Seed (S5, 21 - 29 dap), biological rep 1 GSM159220: Seed (S5, 21 - 29 dap), biological rep 2 GSM159221: Seed (S5, 21 - 29 dap), biological rep 3 | |
| 3. GSE6901: Expression data for stress treatment in rice seedlings [Oryza sativa] | |
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GSM159259: 7-day-old Seedling, biological rep 1
GSM159260: 7-day-old Seedling, biological rep 2 GSM159261: 7-day-old Seedling, biological rep 3 GSM159262: Drought stress, biological rep 1 GSM159263: Drought stress, biological rep 2 GSM159264: Drought stress, biological rep 3 GSM159265: Salt stress, biological rep 1 GSM159266: Salt stress, biological rep 2 GSM159267: Salt stress, biological rep 3 GSM159268: Cold stress, biological rep 1 GSM159269: Cold stress, biological rep 2 GSM159270: Cold stress, biological rep 3 | |
| 4. GSE7197: Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice [Oryza sativa] | |
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GSM173080: Rice MH63 Control2
GSM173086: Rice MH63 Control1 GSM173089: Rice MH63 Control3 GSM173091: Rice OsSRT1 RNAi transgenic line LM1 GSM173093: Rice OsSRT1 RNAi transgenic line LM2 GSM173094: Rice OsSRT1 RNAi transgenic line LM3 | |
| 5. GSE6908: Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile [Oryza sativa] | |
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GSM159172: Rice coleoptiles, 4 days old, aerobic, rep N.1 (sample#9)
GSM159173: Rice coleoptiles, 4 days old, aerobic, rep N.2 (sample#10) GSM159271: Rice coleoptiles, 4 days old, anoxic, Rep 1 (Sample #11) GSM159272: Rice coleoptiles, 4 days old, anoxic, Rep 2 (Sample #12) | |
| 6. GSE6737: Over-expression of a Type-A Response Regulator Alters Rice Morphology and Cytokinin Metabolism [Oryza sativa] | |
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GSM154829: Root_DMSO-treatment_30min_rep 1
GSM154831: Root_DMSO-treatment_30min_rep 2 GSM154832: Root_DMSO-treatment_30min_rep 3 GSM154833: Root_tZ-treatment_30min_rep 1 GSM154937: Root_tZ-treatment_30min_rep 2 GSM154938: Root_tZ-treatment_30min_rep 3 GSM154939: Root_DMSO-treatment_120min_rep 1 GSM154940: Root_DMSO-treatment_120min_rep 2 GSM154941: Root_DMSO-treatment_120min_rep 3 GSM154942: Root_tZ-treatment_120min_rep 1 GSM154943: Root_tZ-treatment_120min_rep 2 GSM154944: Root_tZ-treatment_120min_rep 3 GSM154945: Leaf_DMSO-treatment_30min_rep 1 GSM154946: Leaf_DMSO-treatment_30min_rep 2 GSM154947: Leaf_DMSO-treatment_30min_rep 3 GSM154948: Leaf_tZ-treatment_30min_rep 1 GSM154949: Leaf_tZ-treatment_30min_rep 2 GSM154950: Leaf_tZ-treatment_30min_rep 3 GSM154951: Leaf_DMSO-treatment_120min_rep 1 GSM154952: Leaf_DMSO-treatment_120min_rep 2 GSM154953: Leaf_DMSO-treatment_120min_rep 3 GSM154954: Leaf_tZ-treatment_120min_rep 1 GSM154955: Leaf_tZ-treatment_120min_rep 2 GSM154956: Leaf_tZ-treatment_120min_rep 3 GSM154957: Leaf_control_rep 1 GSM154958: Leaf_control_rep 2 GSM154959: Leaf_OsRR6-overexpressor_rep 1 GSM154960: Leaf_OsRR6-overexpressor_rep 2 | |
| 7. GSE4438: Expression data from rice under salinity stress [Oryza sativa Oryza sativa (indica cultivar-group) Oryza sativa (japonica cultivar-group)] | |
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GSM99858: TCHW P1_m103 control, biological rep1
GSM99859: TCHW P2_m103 control, biological rep2 GSM99860: TCHW P3_m103 control, biological rep3 GSM99861: TCHW P4_m103 salt stress, biological rep1 GSM99862: TCHW P5_m103 salt stress, biological rep2 GSM99863: TCHW P6_m103 salt stress, biological rep3 GSM99864: TCHW P7_ir29 control, biological rep1 GSM99865: TCHW P8_ir29 control, biological rep2 GSM99866: TCHW P9_ir29 control, biological rep3 GSM99867: TCHW P10_ir29 salt stress, biological rep1 GSM99868: TCHW P11_ir29 salt stress, biological rep2 GSM99869: TCHW P12_ir29 salt stress, biological rep3 GSM99870: TCHW P13_agami control, biological rep1 GSM99871: TCHW P14_agami control, biological rep2 GSM99872: TCHW P15_agami control, biological rep3 GSM99873: TCHW P16_agami salt stress, biological rep1 GSM99874: TCHW P17_agami salt stress, biological rep2 GSM99875: TCHW P18_agami salt stress, biological rep3 GSM99877: TCHW P19_ir29 control, biological rep1 GSM99878: TCHW P20_ir29 control, biological rep2 GSM99879: TCHW P21_ir29 control, biological rep3 GSM99880: TCHW P22_ir29 salt stress, biological rep1 GSM99881: TCHW P23_ir29 salt stress, biological rep2 GSM99882: TCHW P24_ir29 salt stress, biological rep3 | |
| 8. GSE4471: Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate [Oryza sativa] | |
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GSM100439: Rice Azucena 0ppm Arsenate (Control) Rep1
GSM100440: Rice Azucena 0ppm Arsenate (Control) Rep2 GSM149409: Rice Azucena 0ppm Arsenate (Control) Rep3 GSM100441: Rice Azucena 1ppm Arsenate Rep1 GSM100442: Rice Azucena 1ppm Arsenate Rep2 GSM149410: Rice Azucena 1ppm Arsenate Rep3 GSM100443: Rice Bala 0ppm Arsenate (Control) Rep1 GSM100444: Rice Bala 0ppm Arsenate (Control) Rep2 GSM149411: Rice Bala 0ppm Arsenate (Control) Rep3 GSM100445: Rice Bala 1ppm Arsenate Rep1 GSM100446: Rice Bala 1ppm Arsenate Rep2 GSM149412: Rice Bala 1ppm Arsenate Rep3 | |
| 9. GSE3053: Rice salt expression [Oryza sativa Oryza sativa (indica cultivar-group)] | |
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GSM67052: FL478 control rep 1
GSM67053: FL478 control rep 2 GSM67054: FL478 control rep 3 GSM67055: FL478 salt stressed rep 1 GSM67056: FL478 salt stressed rep 2 GSM67057: FL478 salt stressed rep 3 GSM67058: IR29 control rep 1 GSM67059: IR29 control rep 2 GSM67060: IR29 salt stressed rep 1 GSM67061: IR29 salt stressed rep 2 GSM67062: IR29 salt stressed rep 3 < | |
| 10. GSE661: ABA or GA calli treatment [Oryza sativa] | |
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GSM9853: 50uM ABA_24
GSM9854: 50uM ABA_20 GSM9855: 50uM ABA_19 GSM9856: 50uM ABA_23 GSM9857: 50uM GA_04 GSM9858: 50uM GA_05 GSM9859: 50uM GA_07 GSM9860: 50uM GA_08 | |
| NOTE: The Platform for GSE 1-9 is [GPL2025], and [GPL477] for GSE 10. | |
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